Posted: Mar 12, 2010 2:18 am
by RationalObserver
I just BLASTed the first 20 letters of the Protein sequence Cal provided and got for the top hits (incidentally, they were all 100% matches):

ACZ28705.1 paired box protein 6 isoform c [Homo sapiens] 100%
ACI23462.1 Pax6 variant [Bufo raddei] 100%
XP_001918200.1 PREDICTED: similar to paired box 6 transcript [Equus caballus] 100%
BAG52023.1 unnamed protein product [Homo sapiens] 100%
CAG38085.1 paired box 6 [Homo sapiens] >emb|CAG38361.1| paired box 6 [Homo sapiens] 100%
CAG38084.1 paired box 6 [Homo sapiens] >emb|CAG38360.1| paired box 6 [Homo sapiens] 100%
CAG38083.1 paired box 6 [Homo sapiens] >emb|CAG38359.1| paired box 6 [Homo sapiens] 100%
ABS17534.1 PAX6 [Bufo raddei]



So at least the protein sequence is correct...

Then I BLASTed the first 180 letters of the DNA sequence and I got:

NM_001127612.1 Homo sapiens paired box 6 (PAX6), transcript variant 3, mRNA 100%
NM_000280.3 Homo sapiens paired box 6 (PAX6), transcript variant 1, mRNA 100%


So i don’t see a problem...


[EDIT]
nastelrox and Rumraket:
do WA have DNA sequence data with introns removed?